Were there any crew casualties on the Agincourt? (Didn't realize until Alice what's her name that the game tracked crew past the officers.)
Alice is an officer, just an unclaimed one. She should now become an honorary character, given her efforts. As far as I know, below the officer ranks the crew just tracks total numbers of crew, normally about a thousand per ship (8 or so for a fighter). I don't know if you can take casualties to this unless the whole ship blows up.
What kind of ships are Bandit 2 and 3?
Right now, I think we can assume Beki is beam ship, with massively powerful power plant for the beam weapons - explains the huge explosion.
Mughal explosion fits more with engine explosion.
Retrating khan is probably a missile-launchers who gets out of the way, or goes to reload.
I should check back to see if Khan retreated after or before the suspected launch of size-1 missile. Because Khan and Mughal are missile-launchers, one class for anti-missile, the other for long-range anti-ship missiles.
I also suspect either Bandits 2 and 3 don't have missiles, or have already launched them and they will hit soon. At 25m km, they're way beyond Prix firing range, from what I can tell of the right against Bandits 1.
That matches my assessment. I believe the retreating ship turned away after all enemy missiles were expended. Assuming that means it was the one to fire them, it's very good news for us.