most puppets will relinquish their supply system to their master, Manchuria and most of the asian controlled Japanese mainland nations are good examples, its when a puppet assumes its own stockpile that it becomes a major issue, this can be fixed by saving the game before the conquer message...if the stockpile appears then reload and choose conquer instead. While the logistical anomaly is annoying, there are work arounds to fixing the issue if you are painted into a corner with it. In this particular scenario as I already posted, airbridge could probably be sufficient to counteract the supply anomaly. You could also simply edit your savegame and manually move all your capital stockpile supply to turkey's capital stockpile supply. If its a singleplayer game...and nobody is looking, are you really going to worry about the ethics of editing files to fix a bug? Its not like your gaining an unfair advantage over your opponent....the fact that you have a brain is already a huge unfair advantage over the Paradox AI.