First off, thank you for this amazing game. Personally I think Tyranny is among the top 10 CRPGs ever, quite an accomplishment 
Anyway, here are some more or less minor issues I discovered late in the game, which you might want to look into. This is all on a story difficulty Trial of Iron solo-run where I went Anarchy path, so I can't give you save throughout, but I've included my last save should you need it.
Can't kill Cairn
Somehow I managed, totally inadvertently, to get in a situation where I can't finish off Cairn and end the Edict of Stone. I became Prima of the Stonestalker tribe and completed all the side quests in Stone Sea (except Return to the Wild, I killed Left-Claw and "failed" it), got the Azure Shield and returned it to Bleden Mark. I then went to Howling Rock. When I got there all the Earthshakers were dead, and there were no people there at all. I couldn't interact with Cairn at all. I never got any quest to kill him either, not sure if there should be one.
2 Azure Shields:
I used the "Growl" option (demanding she give the shield to her Prima) on Red-Fang and she gave me the Azure Shield. Then I talked to her again and attacked her. She dropped a SECOND Azure Shield. I even got 2x the quest to return it to Bleden Mark.
2 Iron Marshals
I killed Iron Marshal Erenyos during the battle of Vendrien's Well (I was allied with the Vendrien Guard at that time) and took her Iron Marshal Heirloom Blade. When I much later attacked Graven Ashe, she was back alive, and dropped another Iron Marshal Heirloom Blade.
Can't return the Magebane Helm
This is probably working as intended. I was wearing the magebane helm all the time after I got it, and had totally forgotten that it was supposed to keep the bane away from Lethian's Crossing. I was reminded in the final conversation with Tunon, but I did not pick the "It will be returned" option. After that, I tried to go back to Lethian's Crossing to put it back, but I could find no way to do that.
That's all I could remember for now
Anyway, here are some more or less minor issues I discovered late in the game, which you might want to look into. This is all on a story difficulty Trial of Iron solo-run where I went Anarchy path, so I can't give you save throughout, but I've included my last save should you need it.
Can't kill Cairn
Somehow I managed, totally inadvertently, to get in a situation where I can't finish off Cairn and end the Edict of Stone. I became Prima of the Stonestalker tribe and completed all the side quests in Stone Sea (except Return to the Wild, I killed Left-Claw and "failed" it), got the Azure Shield and returned it to Bleden Mark. I then went to Howling Rock. When I got there all the Earthshakers were dead, and there were no people there at all. I couldn't interact with Cairn at all. I never got any quest to kill him either, not sure if there should be one.
2 Azure Shields:
I used the "Growl" option (demanding she give the shield to her Prima) on Red-Fang and she gave me the Azure Shield. Then I talked to her again and attacked her. She dropped a SECOND Azure Shield. I even got 2x the quest to return it to Bleden Mark.
2 Iron Marshals
I killed Iron Marshal Erenyos during the battle of Vendrien's Well (I was allied with the Vendrien Guard at that time) and took her Iron Marshal Heirloom Blade. When I much later attacked Graven Ashe, she was back alive, and dropped another Iron Marshal Heirloom Blade.
Can't return the Magebane Helm
This is probably working as intended. I was wearing the magebane helm all the time after I got it, and had totally forgotten that it was supposed to keep the bane away from Lethian's Crossing. I was reminded in the final conversation with Tunon, but I did not pick the "It will be returned" option. After that, I tried to go back to Lethian's Crossing to put it back, but I could find no way to do that.
That's all I could remember for now
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