How many division did the soviets have at the beginning of the historic war?
It had a total of 202 divisions on or near the Soviet-German front (and 303 divisions in total).
20,000 aircraft, with at least 7,133 of them operational in or nearly in range with the German border.
How many did they lose in the early war?
The Luftwaffe (claimed) to have destroyed 1,800 aircraft on the first day of the invasion alone. But this is hardly going to be replicated due to the combat system of the game.
In regards to the Red Army, on its 'western front' (i.e. against Army Group Centre alone) by 9th July 1941, it had lost (either destroyed or left behind in retreat) 4,799 tanks, 9,427 guns and mortars and 1,777 combat aircraft. Also it had lost (including all KIA, MIA, WIA, PoW and illness) 341,073 of its original 627,300 strength.
This is also inherently difficult to simulate, partly because of the way AoD models military divisions in the first place.
How about giving germany a surprise attack bonus as japan gets it?
That's easily doable, I created such an event a while ago but have since lost it. However it would take less then 5 minutes to create.