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When i opened Steam and loaded the game all the mods and assets i subscribed to are gone. I'm logged in and I checked my subscriptions and there all there but they don't show up in the content manager.
Check your output_log.txt to see if something is causing it to break the UI...I have had this once with a broken/corrupt asset, can't remember the exact reason though.
Its in ....\Steam\SteamApps\common\Cities_Skylines\Cities_Data
Are the files still on your computer?
In the ...\Steam\SteamApps\ folder do a search for *.crp